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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004361
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTACTCGCTCCGTCCCAAAAA

miRNA*
 TTTTGGACGGAGGGAGCATGC

mismatches: 5
bulges: 0
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pre-miRNA
 TGGTCAGATTATTAGCGGTCTACTCGCTCCGTCCCAAAAAAAGACAAACCCTGGGTTTCCGTGTCCAACTTTGATTGTCCGTCTTATATGAATTTTTTTT
ATAATTCGTATTTTCATTGTTGTTAGATGATAAAACATGATTAATATTTTATGCGTGACTTGTCTTTTTAATTTTTTTTTCATAATTTTTTCAAATAAGA
CGGACGGTCAAACGTTGGACACGGAAACCAGAGTTTGTCTTTTTTTTGGACGGAGGGAGCATGCAGATGAAATTGAATAT

dot-bracket secondary structure
...((((.(((((.(((.....(((.((((((((.((((((((((((((.((((.((((((((((((((((((((((((((((((((.((((........
..((((.((.((.(((((.......))))).)).)).(((..((....(((.....((....))....)))....))..))).))))..)))).))))))
)))))))))))).)))))))))))))))))).)))))))))))))).)))))))).)))..))).)))))..))))....


SIMILARITIES
miRBase osa-MIR812j: 0.00000000000006

PMRD osa-miRf10815-akr: 2e-35

microPC miR812: 2e-38		UniProt no hits

RFAM MIR806: 4e-40		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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